Showing posts with label numerical. Show all posts
Showing posts with label numerical. Show all posts

Sunday, March 31, 2013

Deprecated libraries removed

I had some Common Lisp libraries on Github that I have abandonned a while ago, mostly because I have either

  1. found a better library by someone else,
  2. decided to follow alternative approaches, or
  3. write a better version with an incompatible API.

These libraries have been undergoing some quiet bit-rot for a while which makes them unusable without minor or not so minor fixes, for which I have no time; also, there are better libraries out there for the same purpose.

Having abandonned Common Lisp libraries out there is confusing and goes against the principle of consolidating Common Lisp Libraries, so I decided to remove some repositories. In particular, I have removed

  1. cl-2d, which didn't see any new development in the last two years. My recommended replacement is cl-flexplot, which uses PGF (a LaTeX package) as a backend.
  2. cl-text-tables was simply abandonned, I recommend the excellent cl-csv instead.
  3. cl-numlib is superseded by cl-num-utils.

The latter two suggested replacements are in Quicklisp.

If, for some strange reason, anyone is interested in the code of the dead libraries, just write me an e-mail. But I would prefer if these libraries stayed dead, as there are much better replacements out there.

It is very likely that I will remove other deprecated libraries in the future.

Monday, May 17, 2010

Upgraded array element types and pinned arrays (updated)

I am planning to do a major rewrite of my LLA library in the near future. LLA, which stands for Lisp Linear Algebra, uses BLAS and LAPACK to perform operations on matrices (and vectors), ranging from matrix multiplication to singular value decompositions. LLA is experimental, and its aim is to provide semantics which recognize special matrix types both as inputs and outputs. Maybe I will blog about it sometime, but that's not the focus of this post.

Currently, LLA uses Lisp arrays, but wrapped in a class which has a slot signifying the element type of the arrays. This is because it is meant to be portable, and not all implementations have upgraded array element types for every type LAPACK recognizes (see below). Also, LLA matrix representation is currently column major, and Lisp arrays are row-major.

However, I realized that I can use Lisp arrays in more places - LAPACK handles row-major arrays just fine (as transposed column-major arrays). Besides, having a native Lisp array is nice, eg one can just use functions like REDUCE or REPLACE, without dealing with a special type. However, there is a price to pay: when LAPACK routines are called, the array element type has to be detectable. For implementations which upgrade element types use by LLA to themselves or something specific, this is a cheap operation. For implementations that don't, it requires an extra pass.

Another issue is whether your implementation has what SBCL calls "pinned" arrays. Pinned arrays can make their contents available to foreign routines directly with negligible overhead for a limited duration (or maybe indefinitely, but I prefer the first).

I asked for implementation-specific details on c.l.l, and got the following information:

ImplementationMachineSDCSCDI32I64pinned?
SBCL (1.0.38)64-bit******yes
Lispworks (6.0.1)32-bit**TT**?
Lispworks Personal Edition (5.1.1)32-bit**TT*T?
Clozure CL (1.4, 1.6)32-bit**TT*Tyes
Clozure CL (1.6)64-bit**TT**yes
ECL (10.3.1)32-bit**TTTTyes
ABCL (0.13.0)64-bitTTTTTT?
Allegco CL Enterprise Edition (8.1 & 8.2, Linux and Windows)32-bit*****T?
Allegco CL Enterprise Edition (8.1 & 8.2, Linux and Windows)64-bit******?
CLISP (2.48)bothTTTTTT?
CMUCL (19e)32-bit*****Tyes
Corman Common Lisp (3.01, Windows)?**TTTT?

The interpretation is this: S, D, CS and CD correspond to (complex) single and double float. I32 and I64 are signed-byte types of 32 and 64 bits. * means that the element type is upgraded to itself, otherwise the table shows the upgraded type.

The following table gives some details on the pinning mechanism when the implementation has it:

ImplementationPinning constructNotes
SBCLsb-sys:with-pinned-objects with sb-sys:vector-sappins object only where GC granularity allows
Clozure CLccl:with-pointer-to-ivectordisables GC
ECL?conservative GC, data can be used as long as the object is alive

So LLA is likely to have the following optimization model: it will be blazingly fast (basically the speed of LAPACK, with a tiny bit of overhead) on implementations which support all upgraded types and pinning, and a bit slower on other ones. If your implementation supports upgrading some of the above element types to themselves, those arrays will require no element type detection so they will be faster. I64 is only needed on 64-bit machines.

The motivation behind this decision is that if you are doing serious numerical work, your implementation should support all relevant array element types and also pinning. SBCL does, and since I am using that, the new version of LLA will take advantage of all its nice facilities — it already does, but currently it only runs on SBCL so that was natural. LLA will be fully functional on other implementations, but may be slower.

Please keep sending in information for the implementations you don't see in the table above. I am especially interested in which implementations support pinning. You can use this code snipped to generate output on array element type upgrading:

(flet ((check-upgraded (type)
         (let ((upgraded (upgraded-array-element-type type)))
           (format t "~A is upgraded to ~A~%"
                   type
                   (if (equal type upgraded)
                       "itself"
                       upgraded)))))
  (format t "~2&~A (~A) on ~A (~A)~2%"
          (lisp-implementation-type) (lisp-implementation-version)
          (machine-type) (machine-version))
  (map nil #'check-upgraded '(single-float double-float
                              (complex single-float) (complex double-float)
                              (signed-byte 32) (signed-byte 64))))